Coexistence with the RG6000 Series Software | |
Features have been introduced in
order to allow this version and RG6000 Series Software to coexist on the
same system. | |
Error when cancelling out of colour dialog | |
Occasionally, clicking on the
cancel button of the sample editor's colour dialog would cause an error
message to appear. This bug has now been fixed. | |
Issues when saving run in version 5.0 format | |
Saving a run file in version 5.0
format would previously not correctly produce the file. This has now been
resolved. | |
Temperature Graph Display Issues | |
Certain profiles can cause
display issues in the temperature graph making the temperature appear much
higher than the actual value. This has been
fixed. |
Error when closing sample editor | |
If the sample editor was open
and the first data acquisition occurs while the editor is still open, and
error message will appear when the user closes the window. This has now
been fixed. |
Fix issues when PC not rebooted for more than 24 days. | |
An unneccessary error message
was being raised when a PC has been on after 24 days without rebooting.
This message has been removed. |
Removed irregular jump in temperature graph. | |
Code from the upcoming 7.0
release was accidentally introduced into 6.0 causing a irregular jump in
the temperature graph. | |
Emailing REX files can cause corruption in temperature. | |
Internally REX files are
essentially still a text file format. Because of this email servers often
try to optimise the content of REX files which can cause corrupted
temperature values when the software reinterprets the mangled data. The
software now has improvements to prevent this from
happening. |
Improved compatibility with other software packages. | |
Improvements have been made to
minimise library conflicts with other software packages that may be
installed on the same PC. | |
Additional support for scientific notation | |
More scientific formats have
been provided for the given concentration, allowing customers to use
higher precision numbers with scientific notation. | |
User permissions incorrect when saving files. | |
Rotor-Gene run files were being
saved with the wrong user permissions causing problems for customers who
share their data over a network. This issue has been
resolved. |
Fixed reporting issues on different locales | |
Corrected bug in reporting
mechanism which would occur on certain Windows locales. | |
Analysis restriction removed from Quenched FRET | |
Analysis options are no longer
restricted when running the Quenched FRET template from the quick start
wizard. | |
Cooling too fast when running virtual mode | |
When running the software in
virtual mode the temperature appears to cool immediately. This has been
fixed. | |
Fix temperature graph failure after 24 days without rebooting | |
Due to a bug in the Windows
operating system, if a PC has not been rebooted for more than 24 days this
can trigger an error in the Rotor-Gene software. The software has been
modified to cope with this glitch in Windows. | |
Improved support for USB Serial convertors | |
The handling of USB Converters
has been improved, minor start up issues with converters are now handled
gracefully. |
Sybr Green Template updated | |
Auto gain settings in Sybr Green
template have been updated to improve the fluorescence range. This
overcomes problems where a minimum range of 0 Fl. causes extremely low
gain to be selected. |
Relative Quantitation exported results corrected | |
Fixes a discrepancy between
exported results and report results in Relative Quantitation
analyses. |
Support For Numbered Rotors Improved | |
Rotors with numeric tube
labelling are now fully supported, numeric tube labelling is now used as
default. |
Rotor-Gene 3000 Operational Enhancements | |
Simplified recovery from loss
of factory calibration settings. | |
Fix Reporting Error Following Robotics Installation | |
Fixes an error that appears
when opening reports after installing the Corbett Robotics software. This
was due to a library conflict with the Corbett Robotics
software. |
User Interface Enhancements | |
Sample line pattern now saves
and loads correctly. Fix display of windows on non-4/3 aspect ratios. Reports now display correctly on a Windows 98 system, overcoming a previous issue. Fixed a minor bug where is was possible to leave the Advanced Wizard without specifying concentrations for all standards. Empty columns now do not appear in the exported Excel spreadsheet when using the "Export to Excel" function from the result grid. | |
Improved Compatibility with Older Sample Formats | |
Errors relating to the import
of older sample import files have been resolved. | |
Added COM port selector to Welcome screen | |
The COM port selector is now
visible in the Welcome screen, allowing for the selection of a COM port
other than the previous default of COM1. | |
Unlocked profile for Concentration Measurement | |
The Concentration Measurement
profile may now be modified, making it more useful for other applications
of this analysis such as using the RG as a fluorometer. | |
Saving of REA files fixed | |
Rotor-Gene Run Archives are now
saved correctly. | |
Rotor-Gene 3000 Operational Enhancements | |
An timeout issue which
occasionally occured during the auto-find threshold function has now been
resolved. Machine communications errors experienced when changing rotor speed under some circumstances have been resolved. |
Analysis Change: Delta Delta CT Formula Corrected | |
An incorrect formula was being
used by the Delta Delta CT relative quantitation module to calculate
relative concentration. This formula has been corrected. | |
User Interface Enhancements | |
Fix result grid copy to Excel
leaving empty columns. Added Control column to Comparative Quantitation analysis. Minor changes to captions. Fix bug where browsing up one level in the template selector would cause the items to be displayed in alphabetical order. The wizard used to configure the experiment is now displayed in the Experiment Settings, Messages tab. | |
More Detail Added to Reports | |
Reaction Amplification values
are now displayed in Comparative Quantitation Report. The Melt and Quantitation reports now include the analysed sample page. The ordering of experiment information on reports has been corrected. | |
Formatting of report data corrected | |
The mean and standard deviation
values in the melt reports are now displayed in the user locale, rather
than with US locale formatting. |
Improved Rotor-Gene 3000 Hardware Diagnostics | |
More specific error messages
are now given in response to Source and Detector Motor Jam conditions.
Fixed communications error displayed when the chamber lid is open when attempting to start or resume a run. | |
Fixed Import of Reaction Lists from CAS | |
Importing reaction lists from
the Corbett Robotics CAS-1200 has been fixed. This affects other users
importing sample files generated by version 5 or earlier of the Rotor-Gene
software. |
Operational enhancements for Rotor-Gene 3000 | |
Issues with error messages
appearing when rapidly starting and stopping the Rotor-Gene on version
6.0.1 have been resolved. Improved handling of communication errors has been added. | |
User interface improvements | |
The back button on the Advanced
Wizard is now disabled on the first screen. A warning is now displayed if users attempt to set High Speed steps in the profile. | |
Fixed Reports on Non-English Locales | |
Report values were being
corrupted on non-English locales. This has been
corrected. | |
Improved Compatibility with Rotor-Gene 5.0 Files | |
Experiment notes are now
trimmed when saving in 5.0 format to avoid potential issues loading files
with long text. |
Analysis Change: Quantitation and Comparative Quantitation | |
Improvements have been made to
the normalisation and statistical algorithms used in both Quantitation and
Comparative Quantitation. This will affect Ct values, Takeoff cycles, and
calculated concentrations on existing experiments. The changes use
improved statistical models to more accurately calculated unknown
concentrations. You should revalidate any existing procedure using these
formulae before using in a production environment. | |
Analysis Change: M and B values rearranged to match competitor values | |
To facilitate the use of
published materials, the Rotor-Gene software is changing its reported M
and B values to match those used by the competitor standard curve
arrangement, that is, "CT = log(conc) * m + b" As a rearrangement of equations, the former M and B values are still available from the standard curve in the "conc=10^(mx + b)" format on the Quantitation window, and in the reports. | |
Visually Group Replicates | |
Samples can now be grouped on
the display by right-clicking on any graph and selecting "Group By
Replicates". | |
Operator and Analyst Access Levels | |
Windows Administors can now
define access levels for users on their local computer, or on the entire
network. This allows giving permission to perform runs or analysis only to
certain users. Samples can be locked at the beginning of a run and then
only unlocked by an Administrator, enabling you to enact strong security
policies in the laboratory. | |
Two Standard Curves Relative Quantitation Method Added | |
The Two Standard Curves method
is now available in the software in the new Relative Quantitation
module. | |
Delta Delta CT Relative Quantitation Method Added | |
The Delta Delta CT method is
now available in the software in the new Relative Quantitation
module. | |
New Quick Start Wizard Added | |
To aid new users of the system,
a quick start wizard has been added, featuring a rotor-centric sample
editor. A default experiment name is now generated based on the template
filename, the current date and the run number for the day. This reduces
the number of keyboard entry required to begin a run. | |
Improved Auto-Stat Statistics | |
The result grid statistics now
calculate differently, based on the selected column. For calculated
concentrations in Quantitation, the mean and standard deviation are
calculated to take into account the exponential statistics model, and so
give more meaningful measures of variance. These use orders of magnitude
for standard deviation, and the geometric mean for the
average. | |
Statistics calculated for replicates | |
Replacing the CT standard
deviation, a more comprehensive replicate framework has been put in place.
Samples with identical names are now treated as replicates, and will have
confidence intervals generated for estimated concentrations, CT values and
other calculated results. | |
Export All Analysis To Excel | |
The results of all analysis can
be automatically sent to Excel. Extensions exist to allow this data to be
sent to LIMS systems. | |
User-defined sample groups | |
To facilitate toggling blocks
of samples, a Sample Groups feature enables the user to group related
samples. These can then be turned on or off by right-clicking on the
sample selector. Sample groups will be eventually used to allow grouping
for more complex forms of relative quantitation. | |
Per-channel sample definitions | |
It is now possible to create
completely separate sample definitions for each acquired channel, using
the new sample pages feature. This allows greater flexibility in designing
multiplex experiments, and cleaner result tables for simplex reactions
running multiple standard curves. | |
Concentration Measurement | |
This new analysis technique
enables you to read DNA concentrations on the Rotor-Gene. Comprehensive
statistics are generated, enabling you to have confidence in your
results. | |
Add Support for Nested Amplification | |
It is now possible to set the
rotor speed at each step, to either high, normal or still on the
Rotor-Gene 3000. This enables customers to perform nested
amplification. | |
Cycling Profiles Can Be Chained | |
To allow for cycling profiles
which vary substantially in the middle, such as those used for Nested
amplification, it is now possible to connect different cycling steps
together to create one set of data to be quantitated. This feature now
effectively enables any conceivable cycling profile to be
programmed. | |
Annealing Analysis | |
Annealing Analyses are a useful
tool in detecting unexpected additional products in amplification
reactions, and are added in this version of the software. This is achieved
by setting the profile to ramp downwards in temperature, and then
performing melt analysis with the vertical scale flipped. | |
User Interface Enhancements | |
Easier toggling of options when
displaying two quantitation analyses side-by-side with the drop-down menus
available for all the hidden toolbar buttons. Improved handling of concentrations in scientific notation, and value formatting in general. In result grids, by right-clicking on column headings, the options can be toggled on or off. Only the selected columns will appear in printed reports, allowing a degree of per-site customisation. Sample Editor now has Undo button. Temperature graph can display time axis in real time, not just minutes elapsed since experiment start. The analysis selection window has been made more compact. Printed reports now paginate better. | |
Export To Any Application | |
It is now possible to export
data from the Rotor-Gene application into any third party application,
with the pluggable export filters mechanism. This enables the Rotor-Gene
softare to seamlessly integrate with integrated diagnostics systems and
facilitate analysis in third-party software such as Matlab and statistical
applications. | |
Can Import Standard Curve From Outside Sources | |
The Standard Curve formula can
now be input directly, to allow import of standard curves averaged over
many runs, for example. |
Diagnostic build for MDL | |
In order to further assist with
investigation of temperature calibration value corruption, continuous
logging has been added. Logging is now also performed while the machine is
idle |
Diagnostic build for MDL | |
More detailed logging has been
included in order to assist with investigation of temperature calibration
value corruption |
Virtual mode restored for OEMs | |
Some OEMs have been unable to
run in virtual mode. This has been
rectified. |
Updates to Software Manual | |
Some diagrams in the software
manual were corrected. | |
Improved handling of OEM Units | |
Errors were corrected in 5.0.63
relating to the handling of OEM distribution
units. |
Specific version for instruments 100405 and 100412 | |
This software version is for
use specifically with instruments with serial numbers 100405 and
100412. |
Fixed "Access Denied" Error on Windows NT 4.0 | |
Access Denied errors no longer
occur when opening small REX files on Windows NT 4.0 | |
Corrected Intermittent Overflow Error | |
When the operating computer was
running for longer than 28 days, an Overflow error could appear on some
computers intermittently. This has been fixed in this
release. |
Support for WinNT 4.0 restored | |
Enhancements to windows power
saving handling in version 5.0.47 caused a software error when running the
application under in Windows NT 4.0. This has been
corrected. | |
Minor user interface fixes | |
Fix "Data does not match column
type" error when copying and pasting positive and negative controls in the
sample editor. Fix change scale window appearing off-screen when Large Fonts is enabled. Additional diagnostic information given for troubleshooting logging errors. | |
Fix saving files in old format with touchdown and longrange | |
Saving profiles in version 4.4
format would fail if touchdown or longrange settings were defined. This
has been fixed. |
Analysis Change: Reaction Efficiency Threshold Disabled By Default | |
The Reaction Efficiency
Threshold option, which excludes samples from analysis determined as
non-reactions by the Comparative Quantitation technique, is now disabled
by default. This matches behaviour for analysis prior to version 5.0.28.
It can be enabled via the Quantitation Settings. | |
Software Remembers Last Quantitation Settings For New Analysis | |
The mechanism used to remember
the last quantitation settings selected by the user to be used for
subsequent runs was not working. This has been fixed. This means that it
will no longer be necessary to manually set ones normalisation settings
for individual runs. | |
Analysis Change: Allelic Discrimination, Scatterplot NTC Threshold Fixed | |
A bug would display the
incorrect NTC threshold value in the normalisation settings window for
Allelic Discrimination and Scatterplot Analysis. This has been
fixed. | |
Fix display of auto-find threshold range | |
The highlighted range for
auto-find threshold was being displayed incorrectly when the lower bound
for the search was set to 0 fluorescence units. This has been
fixed. | |
Standard Deviations changed to use STDEV instead of STDEVP | |
The standard deviations
reported in the software now use the unbiased measure instead of the
population standard deviation. This will nominally change error values as
reported in the software for CT standard deviations, and within the
Comparative Quantitation technique. | |
Better Handling of Power Saving Settings | |
Windows Power Saving is now
automatically turned off during runs to prevent an unintended entry into
standby mode. The computer will still be able to enter standby mode
between runs, or when analysing existing runs. | |
User interface fixes | |
When selecting an NTC threshold
of 30%, an error will no longer be displayed requiring the threshold to be
set to lower than this value. The Quantitation Settings box is now more responsive, and handles more intuitively. Speed of handling experiments with many quantitation and comparative quantitation analyses has been improved. The auto-stat facility no longer flickers while the mouse is held down when dragging. Fix comparative quantitation graph not updating during acquisitions. |
Additional support for WinNT restrictions | |
The mechanism used to save
Rotor-Gene settings has been improved. This will help resolve previous
issues with Windows NT systems running in a restricted
mode. | |
Fix to Locale Portability Issue in 5.0.20 | |
A bug in version 5.0.20
reintroduced a locale portability issue for REX files. Files saved in this
version and version 5.0.28 cannot be transported between different
locales. This was due to a bug in a dependent library of the
software. | |
Updates to Help and Manual | |
The help file has been updated
to include warnings against turning off poor replicates, and information
about the 72-well locking ring. | |
Higher Accuracy Auto-Gain for RG-3000 | |
The Auto-Gain feature on the
Rotor-Gene 3000 can now go to fractional levels for gain settings. This
enables greater background signal reproducibility. | |
Overlay Standard Curves Fixed | |
A fault affecting the display
of overlaid standard curves has been fixed, when analyses were not using
the default standard set. | |
Improved Log Scale Graphing | |
The rendering of logarithmic
scale graphs, such as those used in the Quantitation window has been made
more accurate. This makes it easier to visually determine the spacing of
replicates without zooming in. |
Melt Peak Results Improved | |
The smoothing algorithm for the
melt curve analysis has been enhanced to provide more accuracy for
results. This will introduce a shift of up to 0.5 of a degree when
analysing existing runs. | |
Minor User Interface Fixes | |
The term CV used in
Quantitation has been changed to "% Variation" to avoid confusion with the
statistical CV. % Variation represents the percentage by which the
standard's CT deviates from the expected value. An error in the labelling of samples in transpose mode in the help description has been fixed. The Hold Step slider has had the midpoint adjusted. The experiment name in Experiment Info will now shrink to fit the window. Auto-Gain optimisation help is now enabled in all parts of the user interface. If Optical Denature calibration has been defined on a denaturation step, these settings are no longer available under the cycle step to avoid confusion. It is now always possible to view auto-gain optimisation settings, even after a run. Users must now define bins before entering genotypes. | |
Analysis Change: Auto-Find Threshold Improved | |
Auto-Find Threshold in
Quantitation now defaults to looking for a threshold in the lower third of
the graph. This reduces the likelihood of finding thresholds in the non-
exponential region. This will change previous results for experiments
where the found threshold was in the upper two thirds of the graph. To
analyse these experiments according to the previous criteria, manually
increase the search range. Fixed Auto-Threshold still running when standards had been defined, but were deselected. An error is now displayed instead. | |
Analysis Change: New NTC Normalisation Technique | |
A new technique to filter NTC's
from quantitation results, Reaction Efficiency Threshold has been
introduced. This technique uses the reaction efficiency, as measured in
Comparative Quantitation to filter NTC's. Important: This may change results for old experiments, where channels with no detected reaction being eliminated. To preserve the old behaviour, change the Reaction Efficiency Threshold in the Quantitation Settings box to limit at -100%. This cancels out all efficiency threshold calculations. This technique may not be suitable for low signal-to-noise ratio chemistries, such as LUX primers. | |
Improved Time Estimates for Optical Denature | |
Optical Denature runs are now
visualised more accurately, and have a better time estimation. An improved algorithm is now used to estimate tube temperature during an Optical Denature step. |
Better Reaction Efficiency under Optical Denature | |
Optical Denature now uses an
improved peak detection algorithm to determine where the reference sample
has denatured. This will improve the efficiency of your Optical Denature
runs. | |
Improved Rotor-Gene 3000 Handling | |
The communications code for the
Rotor-Gene 3000 has been further enhanced, to handle more types of
communications errors. New Rotor-Gene 3000 models also keep track of the number of runs performed on a machine. This information is now available under the Experiment Info to aid support technicians. | |
Ability to Create Long Hold Steps in Cycling | |
The profile editor has been
updated to allow for long hold steps. The number of seconds should be
entered manually on the left-hand side of the screen. | |
Improved Quality of Exported Data | |
Exported data is no longer
rounded off to 2 decimal places. This will improve the quality of
normalised data when plotted in an external program such as
Excel. | |
Fixes to Melt analyses | |
Melt Analyses were not being
loaded correctly. This has been fixed. A display error in the genotype window since version 4.6 has been fixed when the first defined bin is not Bin A (for example, when the first bin has been removed). | |
Fix error loading experiment from network drive | |
An error which occurred when
loading experiments from a network drive with a UNC path has been
fixed. | |
Melt Genotyping Enhanced | |
Melt Genotyping now allows an
arbitrary number of bins and genotypes, instead of the previous limit of 5
bins and 6 genotypes. | |
Default Melt Hold Changed to 30 Seconds | |
To improve to quality of melt
results, the initial hold for new experiments has been changed to 30
seconds from 15 seconds. | |
Reduced Flicker of Toolbar in Optical Denature Runs | |
The channel toolbar no longer
flickers during Optical Denature steps in the profile. This also corrects
a problem where channel names would disappear when performing especially
long Optical Denature runs. |
Enable support for Rotor-Gene 4.4 files | |
Rotor-Gene version 4.4 files
are now supported by the Rotor-Gene 5 software. | |
Corrections to Manual | |
Minor spelling and grammar
corrections have been made to the user manuals and online
documentation. | |
Fixes to User Interace | |
Some user interface bugs
related to the toggling between different rotor sizes and Optical Denature
have been corrected. Attempting to copy the "Selected" column would cause an error to be displayed. This has been corrected. | |
Temperature Verification Rotor Support | |
This change is the first
instalment in enabling support for temperature verification rotors. This
will assist Corbett technical staff in providing verification information
for your machine. |
Corrections to Manual | |
Minor corrections were made to
typographical errors in Quantitation explanations. | |
Templates screen now supports subfolders | |
To better organise your
protocols, you can add subfolders to the New window. These will appear as
icons that you can double-click to view all contained
templates. | |
Added Support for Restricted Users under Windows NT/2000/XP | |
Once the software has been
installed under Administrator mode, regular users can access the software
as restricted or power users. This allows the Rotor-Gene softare to
integrate with organisations' existing security policies. | |
Fixes to Comparative Quantitation | |
Comparative Quantitation was
not correctly handling analyses performed on secondary standard sets. This
has been fixed. Loading of Comparative Quantitation analyses has been also fixed. General speedups to analysis. |
Sample Editor Now Allows Sample Toggling | |
Samples can now be toggled on
and off in the sample editor. | |
EndPoint Analysis now available | |
A new analysis technique,
EndPoint Analysis, is now included in the Rotor-Gene software. EndPoint
Analysis allows you to perform genotyping and similar analysis on samples
which have been already cycled in another thermal cycler. | |
Scatterplot Analysis now available | |
A new analysis technique,
Scatterplot Analysis, is now included in the Rotor-Gene software.
Scatterplot analysis allows you to view the expression of two channels on
a grid, and map the samples to genotypes. | |
Experiments Signatures now available | |
Experiment files are now signed
with a digital signature. This signature ensures that the file has not
been tampered with or damaged since it was last saved by the Rotor-Gene
software. All files you have saved in previous versions do not have
signatures, and so this verification is not available. | |
Cycling With Optical Denature now available | |
An exciting new technique
allows you to perform amplification based upon the reaction of a
calibrating tube, rather than rely upon timing. The method allows for
greater accuracy and cooler denaturations. | |
Cycling data can be flipped | |
Some cycling techniques produce
data which decreases exponentially instead of increasing. The Flip
Fluorescent Data function allows standard Quantitation analysis to be
performed on these experiments. | |
Profile Editor enhanced | |
The Profile Editor for cycling
has been reworked to make it even easier to define a profile. A preview
graph is now provided for each cycle as well as the entire profile, and
can be modified by dragging the graph lines directly instead of entering
values. | |
Touchdown and Longrange available on any cycle | |
The Touchdown and Longrange
features can now be applied to any point in a cycling step, and are no
longer limited to steps 2 and 3, respectively. | |
HTML Help available | |
Rotor-Gene Help has been
converted to Microsoft HTML Help format. This format provides attractive
searching and indexing capabilities, and ensures the software manual and
online help are up-to-date with the latest developments in the
software. | |
Results in analysis only available once thresholds set | |
Results in the Rotor-Gene
software will now only be provided once the user has completed the
relevant manual steps in the analysis. This ensures that the software will
never provide incorrect results due to the user omitting these manual
steps. | |
Can Set Sample Line Thickness and Style | |
New style settings for graph
lines are available, allowing you to specify line thickness and pattern in
addition to colour. This is useful for printing graphs for black and white
publications. | |
Sample Editor can be resized | |
The Sample Editor window is no
longer a fixed size, and can be maximised to use the full size of the
screen. | |
Show at Most 6 Windows Option now available | |
A new Display Option has been
added to the View, Display Options section of the software. When selected,
a maximum of 6 windows will be displayed. This option is enabled by
default in versions 4.6 of the software, however, it can now be deselected
for users who have larger screens. | |
Can now perform Optimisation Before Run | |
Instead of performing
optimisation just before the first acquisition, it is now possible to
optimise before the run. The machine will heat to the required
temperature, optimise and then start the run. | |
Auto-Optimisation now remembered in templates | |
It is now possible to run an
Auto-Optimisation step in a pre-defined template. | |
Auto-Statistics on Result Grids Improved | |
The tooltip Auto-Statistics
feature has been replaced by a display of the results on the right-hand
side of the main window. This eliminates the problem of the tooltip
disappearing if one selected the results to analyse too
quickly. | |
Remove Sybr from default channel list | |
The Sybr channel is less
effective for performing runs than the FAM/Sybr channel. To encourage
users to use the FAM/Sybr channel instead, this option has been removed
from the default list. Users may still recreate this channel if
required. |
Fixes to European Locale issues | |
Fixed issue loading and saving
concentrations less than 1 when reading files on a locale with a comma as
a decimal separator. Fixed auto-reformat feature which ensures that the format chosen by the user can display the given concentrations to enough accuracy. This feature did not function on non-English locales. | |
Fixes to Far East Locale issues | |
Fixed saving of images in MHT
report files. | |
Add support for version 4.4/4.6 interoperation | |
This version can analyse, in
real time, data being acquired on versions 4.4.3 and later. This provides
enhanced stability when acquiring for Rotor-Gene 2000 users experiencing
acquisition card issues. | |
Fix Skip Issue On Rotor-Gene 3000 | |
This release fixes an error
encountered when clicking "Skip" while the Rotor-Gene 3000 was cooling
during a run, with High-Speed Rotor
enabled. |
Operational Enhancements for Rotor-Gene 3000 | |
False triggering of safety
mechanism on some machines has been corrected. Support for detection of COM ports has been improved. Detects chamber lid opening during run and terminates run. Improved detection of temperature malfunctions to minimise risk of machine damage. Fix Overflow errors shown on some machines when run for the first time. | |
Improve Slope Correction normalisation for downward sloping background levels. | |
If samples have a background
level which slopes downwards instead of upward, slope correction in
previous versions would display a sharp dip in the sample data around
cycle 20. This was because slope correction assumes that the background
level of samples will continue to increase or decrease by the same amount
as occurs in the first couple of cycles. If the background level decreases
each cycle, by cycle 20, some samples may, by this method, have lower than
0 background fluorescence. This caused the normalisation algorithm to set
the signal level to 0 as a warning that something was incorrect. The new
interpretation sees a downward-sloping background as a level which
approaches insignificance over time. By this interpretation, the
normalisation has less and less effect as the run increases, which
produces more continuous results. This change will not affect many customers as, most of the time, the background level is creeping up rather than down. | |
Oldest Log Archives Were Not Being Removed First | |
A bug which would cause newer,
and not older log archives to be removed first has been fixed. Only the 40
most recent runs should be kept by the software in the archive
folder. | |
Bad Filename Choice For Exporting FAM/Sybr Data Changed | |
When exporting raw data for the
FAM/Sybr channels, a filename such as "FAM/Sybr.txt" was being created.
This is not a legal filename, and so has been corrected. | |
Fixed Pause Marker Not Always Drawn On Graph | |
Pause markers would not be
drawn on a graph when paused under some circumstances. A message would
still be displayed in the Experiment Settings window. This has been
fixed. | |
Fix Pause Not Resuming Under Some Conditions on RG-3000 | |
Under some conditions, the
software would not resume the run after pausing the Rotor-Gene 3000. This
has been fixed. | |
Added Forward Support For Next Major Release File Format | |
This version of the software
has support built in to enable reading REX files created by the next major
software release. | |
Log Archive format changed to ZIP format | |
Log Archive files are now
stored as ZIP files, to make it easier for distributors to diagnose
support issues. | |
Operational Enhancements for RG-2000 | |
This change improves the
handling of Rotor-Gene 2000's still using "Older Style" rotors when
performing melts. It also fixes a bug introduced where the countdown for the first cycle would begin prematurely when skipping the denature step rapidly after commencing the run. | |
Fixed: Can't delete additional standard sets | |
A bug prevented the user from
deleting additional standard sets once they had been created. This has
been fixed. | |
Minor Interface Fixes | |
When pasting sample names with
CONTROL-V in the sample editor, the first cell was being duplicated. This
has been fixed. |
Improvements to handling of Older-Style Rotors in RG-2000 | |
The Rotor-Gene 2000 will now
cycle more accurately when performing 36-well runs with the Older-Style
Rotors. | |
Fix no temperature graph when Windows running more than 28 days | |
A bug in the temperature
handling meant that the temperature graph would not be updated if the
Windows was left running for longer than 28 days. The operation of the run
would be unaffected. | |
Copy to Clipboard available for Result Grids | |
In addition to the export to
excel option, one can now select a range of the result grids in
Quantitation and elsewhere, and copy the results. | |
Can no longer perform Auto-Gain optimisation for 100 Fl | |
When performing Auto-Gain
optimisation, it was previously possible to set a optimisation
fluorescence of 100 fluorescence units. Readings at this level can be
off-scale, and so the maximum has been reduced to 99 Fluorescence units to
avoid users encountering this problem. | |
Hold times in minutes and seconds | |
Hold times are now expressed in
terms of minutes and seconds instead of just seconds. This improves the
readability of longer hold times. | |
Minor Interface Fixes | |
Spelling fix. The Auto-Gain optimisation drop-down box where one could select to insert additional channels was not being updated when an Auto-Gain setting was removed. This bug did not have any operational impact. Fix Hold For time of 4 seconds being displayed in temperature window before run is started. | |
Improved Logging Facilities | |
More extensive logging
capabilities have been added to the RG-3000 to facilitate troubleshooting.
The number of last runs stored has been increased from 20 to
40. | |
RG-3000 Operational Enhancements | |
Extra checking added to avoid
"Bad Start Byte" problems on Welcome screen and elsewhere.
Improved handling of "Checksum invalid" errors when acquiring data. The software will now retry up to 10 times when encountering this non-fatal error. Improved handling of non-fatal machine errors. This will enable the run to continue running in cases where the error encountered can be successfully recovered. |
Save As button fixed in "Send Support Email" option. | |
The Save As button was broken
in the 4.6.66. This was a minor fix applied in version
4.6.67. | |
Fix Auto-Gain selecting incorrect gain | |
When the auto-gain operation
cannot find a valid gain, it will select the closest gain. Before version
4.6.70, the software would choose the last gain attempted instead of the
closest value. | |
Place locking ring message included on wizard. | |
Customers are now recommended
to use locking rings for 72-well runs. The software has been updated to
include this recommendation instead of the blank tubes and caps message in
the experiment wizard. | |
Comparative Quantitation algorithm improved | |
Previously Comparative
Quantitation calculated its estimated amplification from the raw data. If
the data was noisy, this could result in inaccurate amplifications being
estimated. The new software applies a 1-cycle window of smoothing to the
data before calculating amplification values. | |
Allow entry of floating point gain | |
To troubleshoot curve off-scale
issues, the software now allows the entry of floating point gain values
for the RG-3000. The Auto-Gain functionality still selects integral gain
values. | |
Fix RG-3000 machine handling when cycling on hold for long period. | |
Some RG-3000 machines
experienced a timeout problem when set up with a cycling profile which
remained on a single temperature for long periods. This has been
fixed. | |
Improved temperature plotting for some RG-3000 machines. | |
While new models of the RG-3000
included a temperature optimisation mechanism, the software did not yet
take into account these corrections to the temperature plot. This change
more accurately plots the tube temperature for these
machines. | |
Rename default channel from FAM to FAM/Sybr. | |
The FAM channel has been
discovered to give better results than the Sybr channel. To encourage
customers to use the FAM channel instead, the FAM channel has been renamed
to FAM/Sybr, and has been made the default acquisition
channel. | |
FAM/Sybr is now the default acquisition channel. | |
The FAM channel has been
discovered to give better results than the Sybr channel. To encourage
customers to use the FAM channel instead, the FAM channel has been renamed
to FAM/Sybr, and has been made the default acquisition
channel. | |
Software installs to "RotorGene 4.6" folder. | |
To facilitate installation of
multiple versions of the software, the Rotor-Gene's default installation
folder has been changed to Rotor-Gene 4.6. The desktop icon's text has
also been changed to Rotor-Gene 4.6. |
Save As button fixed in "Send Support Email" option. | |
The Save As button was broken
in the build of 4.6.66. This release fixes this
problem. |
Fixes to Log Archiving to reduce the frequency of logging being disabled during runs | |
Sometimes, due to file system
locking errors on Windows 2000 systems, it is not possible for the
software to manage the Log Archive directory successfully - that is,
removing old experiments to make way for new ones, and re-numbering the
folders. To fix this limitation, the software has introduced a more robust
method of handling the folders, which is less likely to cause file system
locking. | |
Fixed "Object Variable Or With Block Not Set" error when opening gain-optimisation | |
This bug has been fixed in this
release. The problem was due to the software attempting to load auto
optimisation settings for a channel which no longer exists, causing the
fault. This bug can be reproduced by the following steps: 1. Create a new channel. 2. Perform auto-gain optimisation on the channel. 3. Delete the channel. 4. Save the experiment. 5. Go to File, New and open the experiment wizard. 6. Click through to the channel setup page. 7. Click Optimise. 8. The message "Object Variable or With Block Not Set" appears. |
More robust spike checking for RG-2000 | |
An additional algorithm has
been added to checking for spikes which corrects for signal dropouts which
occur on some machines. | |
Improved handling of RG-3000 | |
Control is returned to the user
immediately when Rotor-Gene shuts down (Requires EPROM upgrade to enable
this fix) Fixes timeout on shutting down machine (Requires EPROM upgrade to enable this fix) Fixes "Bad Serial Start Byte" errors when starting application after a serial timeout. Improved recovery from errors during a run. The machine can now be turned on and off during a run and will restore temperature and continue to cycle. The serial link can also be temporarily lost without disrupting the run. | |
Improved standard curve handling | |
In version 4.6.50 and earlier,
the standard curve would always be drawn correctly where standards were
defined. When standards were defined and then disabled, however, the last
standard curve would still remain displayed. The curve is now correctly
hidden, and the standard curve formula written as "N/A". No calculation of
concentrations would occur, so the main impact of this defect was a
display anomaly. An anomaly where it was possible to create a standard
curve using 1 standard instead of the minimum 2 has also been rectified.
Where only 1 standard is defined, the standard curve formula is now shown
as "N/A". | |
Improved handling of imported standard curves | |
Customer feedback indicated
that the adjustment of standard curves was a process that occurred with
too little transparency. Rules such as the adjustment of imported curves
to pass through references in the target experiment were not well
understood. This release provides information about exactly what operation
will be performed during an import, and enforces "best practice" with
relation to standard curves. In particular, importing a standard curve
without a reference standard now produces a warning. | |
Fixes to logging | |
On some computers, the new log
handler could occasionally generate a permission denied error before a
run. This error has been suppressed and a message placed in the
experiment's messages content. This fix will also improve reliability on
networked systems where the drives can temporarily become
unavailable. | |
R values and other statistics on standard curve can now can be exported to JPEG | |
The statistics window has been
modified to include R and R-squared values. The R-squared value indicates
the percentage of the results explained by the hypothesis. For example, an
R-squared value of 0.94 means that our assumption that the standards match
their given concentrations is suggested by 94% of our data, and that only
6% does not agree with this hypothesis. The statistics are now included in reports and will be exported to JPEG files. | |
Analysis window display error fixed | |
When performing a run, if the
analysis window was open before data was acquired, then data was acquired
for the first time, a channel would appear in the raw channels selector in
the top of the screen but it would not appear in the analysis window. It
was necessary to close the analysis window and then re-open it. This has
been fixed. |
Added "Send Support Email" Facility | |
The new "Help, Send Support
Email" menu option allows emailing of all log files, and experiment in one
file to aid Corbett Research support technicians in resolving customer
issues. | |
Melt Curve Full Report option added | |
Melt Curve Analysis now has a
Full Report option to match that available in Quantitation analysis. The
Full Report contains all graphs related to the analysis as well as the
profile information. | |
Interface to edit NTC Threshold improved | |
The screen to modify the NTC
Threshold has been made more responsive, making it easier to view the
effects a certain threshold level will have on results. | |
Fixed NTC Percentage Threshold not being saved correctly in experiments (since 4.6.44). | |
A bug was introduced in 4.6.44
which would not save the NTC Percentage Threshold correctly. This is fixed
in this release. |