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Fermentas ISO9002
 Restriction Endonucleases |Modifying Enzymes |PCR |Kits |Markers  Nucleic Acids
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S

U

P

P

O

R

T

 

Alphabetic List of Recognition Specificities

A  C  G  R  Y  T  W

 

 indicates enzymes that are not currently commercially available

Single letter code:
R = G or A
Y = C or T
W = A or T
M = A or C
K = G or T
S = C or G
H = A, C or T
V = A, C or G
B = C, G or T
D = A, G or T
N = G, A, T or C

A

Specificity 5'=>3' Enzyme
AA^CGTT Psp1406I
A^AGCTT HindIII
AAT^ATT SspI
^AATT TasI
A^CATGT BspLU11I
A^CCGGT BshTI
ACCNNNNNNGGT HgiEII
ACCTGC(N)4/8^ BveI
A^CCWGGT SexAI
A^CGCGT MluI
ACGGC(N)12/14^ BceAI
ACGGG BscGI
A^CGT MaeII
ACGT^ TaiI
^10/15(N)AC(N)4GTAYC(N)12/7^ BaeI
ACN^GT TaaI
ACNNNNNCTCC BsaXI
A^CRYGT AflIII
A^CTAGT Bcul
ACTGGG(N)5/4^ BfiI
ACTGG(N)1/-1^ BseNI
^9/15(N)AC(N)6TGG(N)14/8^ CjeI
A^GATCT Bglll
AGC^GCT Eco47III
AG^CT Alul
AGG^CCT Eco147I
AG^GWCCT Sse8647I
AGT^ACT ScaI
AT^CGAT Bsu15I
ATG^CAT BfrBI
ATGCA^T Mph1103I
AT^TAAT VspI
ATTT^AAAT SmiI
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C

Specificity 5'=>3' Enzyme
CAACAC BsbI
CAARCA(N)11/9^ Tth111II
C^AATTG MunI
CACCCA(N)11/9^ TaqII
CACCTGC(N)4/8^ AarI
CACGAG-5/-1^ BssI
CAC^GTC BtrI
CAC^GTG Eco72I
CACNN^NNGTG OliI
CACNNN^GTG AdeI
^0/2(N)CACTGC BtsI
CAGCTC(N)7/11 AceIII
CAG^CTG Pvull
CAGNNN^CTG CaiI
CASTG(N)2/-7^ TspRI
CAYNN^NNRTG MslI
CA^TATG NdeI
^0/2(N)CATCC BseGI
^13/9(N)CATCC FokI
14/10(N)CATCC StsI
CATG^ NlaIII
C^ATG CviAII
^0/2(N)CATTGC BseMI
^-1/1(N)CCAGT BseNl
^8/14(N)CCA(N)6GT(N)15/9^ CjeI
^7/12(N)CCA(N)6GTC(N)13/8^ Bsp24I
^7/13(N)CCA(N)7TC(N)14/8^ CjePI
CCANNNN^NTGG Van91I
CCANNNNN^NNNNTGG XcmI
CCANNNNN^NTGG BstXI
CCATC BccI
C^CATGG NcoI
C^CRYGG DsaI
CCCACA(N)12/9^ RleAI
^4/5(N)CCCAGT BfiI
CCCGC(N)4/6^ SmuI
C^CCGGG Cfr9I
CCC^GGG Smal
CCCG(N)4/8^ Sth132I
CCCGT BscGI
CCGC-3/-1^ AciI
CCGC^GG Cfr42I
CCG^CTC MbiI
C^CGG HpaII, MspI
^CCNGG BssKI
CC^NGG Bme1390I
C^CNNGG BseDI
CCNNNNN^NNGG BseLI
C^CRYGG DsaI
^CCSGG EcoHI
CC^SGG BcnI
C^CTAGG XmaJI
CCTCAGC-5/-2^ BbvCI
CCTC(N)7/6^ MnlI
CCTGCA^GG SdaI
CC^TNAGC Bpu10I
CC^TNAGG Eco81I
CCTNN^NNNAGG XagI
^CCWGG EcoRII
CC^WGG MvaI
C^CWWGG Eco130I
CGAACG UbaPI
CGAT^CG PvuI
^10/12(N)CGA(N)6TGC(N)12/10^ BcgI
CG^CCGGCG Sse232I
^CGCG SelI
CG^CG Bsh1236I
C^GGCCG Eco52I
^-1/-5CGGCCR GdiII
^8/4(N)CGGG Sth132I
CG^GWCCG Cpol
CGRY^CG Bsh1285I
C^GTACG Pfl23II
CGTCTC(N)1/5^ Esp3I
CGTTCG UbaPI
CGWCG^ Hpy99I
CMG^CKG NspBII
CR^CCGGYG SgrAI
CTACGA Pfl1108I
C^TAG MaeI
CTCAG(N)10/8^ BseMII
^14/16(N)CTCCAG GsuI
^8/10(N)CTCCTC BseRI
C^TCGAG XhoI
CTC^GAG SciI
^14/16(N)CTCAAG Bce83I
CTCGTG-5/-1^ BssSI
CTCTTC(N)1/4^ Eam1104I
CTGAAG(N)16/14^ Eco57I
^14/16(N)CTGCAC BsgI
CTGCA^G Pstl
CTGGAC BspGI
^8/10(N)CTGAG BseMII
CTGGAG(N)16/14^ GsuI
CTGRAG(N)16/14^ Eco57MI
C^TNAG DdeI
C^TRYAG BfmI
C^TTAAG BspTI
^14/16(N)CTTCAG Eco57I
CTTGAG(N)16/14^ Bce83I
C^TYRAG SmlI
^14/16(N)CTYCAG Eco57MI
C^YCGRG Eco88I
CYCGR^G Nli3877I
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G

Specificity 5'=>3' Enzyme
GAACCA DrdII
^7/12(N)GAAC(N)5CTC(N)13/8^ PpiI
^7/12-13(N)GAAC(N)6TCC(N)12-13/7^ AloI
GAAGAC(N)2/6^ BpiI
GAAGAC(N)7/11^ Bbr7I
^4/1(N)GAAGAG Eam1104I
^4/1(N)GAAGAGC SapI
GAAGA(N)8/7^ MboII
GAANN^NNTTC PdmI
GAATGC(N)1/-1^ Mva1269I
G^AATTC EcoRI
^8/13-14(N)GAY(N)5VTC(N)13-14/8^ Hin4I
^0/-3GACCC SimI
GACCGA(N)11/9^ TaqII
GACGC(N)5/10^ HgaI
GACGT^C AatII
GAC^GTG BtrI
^5/5(N)GACTC SchI
^5/4(N)GACTC PleI
GACN^NNGTC PsyI
GACNN^NNGTC BoxI
GACNNN^NNGTC Eam1105I
GACNNNN^NNGTC AasI
^8/13(N)GAC(N)6TGG(N)12/7^ Bsp24I
^5/1(N)GAGAC Alw26I
^5/1(N)GAGACC Eco31I
^5/1(N)GAGACG Esp3I
GAG^CGG MbiI
GAG^CTC Ecl136ll
GAGCT^C SacI
^11/7(N)GAGCTG AceIII
^6/7(N)GAGG MnlI
GAGTC(N)5/5^ SchI
GAGTC(N)4/5^ PleI
^8/13(N)GAG(N)5CTC(N)13/8^ BplI
GAGGAG(N)10/8^ BseRI
^8/13(N)GAG(N)5GTTC(N)12/7^ PpiI
G^ANTC HinfI
GAYNNNNNRTC HaeIV
GAT^ATC Eco32I
^GATC Bsp143I, MboI
Gm6A^TC DpnI
GAT^C BspKT6I
GATC^ ChaI
^5/4(N)GATCC BspPI
^9/5(N)GATGC LweI
^6/4(N)GATGC BscAI
GATGG BccI
^8/14(N)GA(N)7TGG(N)13/7^ CjePI
GATNN^NNATC BseJI
G^AWTC TfiI
GCAATG(N)2/0^ BseMI
GCAGC(N)8/12^ BseXI
GCAGGTG AarI
^8/4(N)GCAGGT BveI
GCAGTG(N)2/0^ BtsI
GCANNNN^NTGC BstAPI
GCANNNNN^TGC ApaBI
GCATC(N)5/9^ LweI
GCATC(N)4/6^ BscAI
^10/12(N)GCA(N)6TCG(N)12/10^ BcgI
GCATG^C PaeI
^-1/1(N)GCATTC Mva1269I
GCCC^GGGC SrfI
G^CCGGC NgoMIV
GCC^GGC PdiI
^14/12(N)GCCGT BceAi
GCCNNNN^NGGC Bgll
GCGAT^CGC SgfI
G^CGC Hin6I
GCG^C HhaI
G^CGCGC PauI
GCGG-3/-1^ AciI
GC^GGCCGC NotI
^6/4(N)GCGGG SmuI
GC^NGC SatI
GCN^NGC Cac8I
GCNNNNN^NNGC HpyF10VI
^10/5(N)GCGTC HgaI
GCSG^C TauI
G^CTAGC NheI
GCTAG^C AceII
GCTCTTC(N)1/4^ SapI
GCTGAGG-5/-2^ BbvCI
^12/8(N)GCTGC BseXI
GC^TNAGC Bpu1102I
GC^TNAGG Bpu10I
G^CWGC TseI
GDGCH^C SduI
^7/10(N)GGAGNNNNNGT(N)12/9^ BsaXI
G^GATCC BamHI
GGATC(N)4/5^ BspPI
^7/12-13(N)GGA(N)6GTTC(N)12-13/7^ AloI
^5/6(N)GGATAC BfuI
GGATG(N)2/0^ BseGI
GGATG(N)9/13^ FokI
GGATG(N)10/14^ StsI
GG^CC BsuRI
GGCCGG^CC FseI
GGCCNNNN^NGGCC SfiI
G^GCGCC KasI
GG^CGCC NarI
GGC^GCC EheI
GGCGC^C BbeI
GG^CGCGCC AscI
GGCGGA(N)11/9^ EciI
GGGAC(N)10/14^ BsmFI
G^GGCCC Bsp120I
GGGCC^C ApaI
GGGCMC BmgI
GGGTC-3/0^ SimI
GG^GWCCC SanDI
^GGNCC UnbI
G^GNCC Cfr13I
GGNC^C FmuI
GGN^NCC BspLI
G^GYRCC BshNI
G^GTACC Acc65I
GGTAC^C KpnI
GGTCTC(N)1/5^ Eco31I
GGTGA(N)8/7^ HphI
GGTGA(N)8/8^ SspD5I
G^GTNACC Eco91I
^GGWCC VpaK11AI
G^GWCC Eco47I
GKGCCC BmgI
GKGCM^C BseSI
GR^CGYC Hin1I
GRGCY^C Eco24I
^7/12(N)GRTAC(N)4GT(N)15/10^ BaeI
G^TAC Csp6I
GT^AC RsaI
GTA^TAC Bst1107I
GTATCC(N)6/5^ BfuI
GTCCAG BspGI
^14/10(N)GTCCC BsmFI
G^TCGAC SalI
GTCTC(N)1/5^ Alw26I
^6/2(N)GTCTTC BpiI
^11/7(N)GTCTTC Bbr7I
G^TGCAC Alw44I
GTGCAG(N)16/14^ BsgI
GTGTTG BsbI
GT^MKAC XmiI
^GTNAC MaeIII
GTN^NAC Hpy8I
^GTSAC NmuCI
^18/20(N)GTYGGA MmeI
GTY^RAC HincII
GTT^AAC KspAI
GTTT^AAAC MssI
GWGCW^C Alw21I
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R

Specificity 5'=>3' Enzyme
R^AATTY XapI
RCATG^Y XceI
R^CCGGY Cfr10I
R^GATCY PsuI
RGC^GCY LpnI
RGCGC^Y Bsp143II
RG^CY CviJI
RG^GWCCY Psp5II
RG^GNCCY EcoO109I
RGGNC^CY PssI
RTGC^GCAY FspAI
Y
YAC^GTR BsaAI
YGGCCG-5/-1^ GdiII
Y^GGCCR CfrI
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T  

Specificity 5'=>3' Enzyme
TAC^GTA Eco105I
^7/8(N)TCACC HphI
^8/8(N)TCACC SspD5I
T^CATGA PagI
^9/11(N)TCCGCC EciI
T^CCGGA Kpn2I
T^CCNGGA PfoI
TCCRAC(N)20/18^ MmeI
T^CGA TaqI
TCG^CGA Bsp68I
TCGTAG Pfl1108I
TCN^GA Hpy188I
TC^NNGA Hpy188III
T^CTAGA Xbal
^7/8(N)TCTTC Mboll
T^GATCA BclI
TG^CA CviRI
TGC^GCA NsbI
TGG^CCA MlsI
^9/11(N)TTCGGTC TaqII
^9/11(N)TTGGGTG TaqII
TGGTTC DrdII
^9/11(N)TGYTTG Tth111II
T^GTACA Bsp1407I
^9/12(N)TGTGGG RleAI
T^TAA Tru1I
TTAAT^TAA PacI
TTA^TAA PsiI
TT^CGAA Bsp119I
TTT^AAA DraI
W
W^CCGGW BsaWI
WGG^CCW HaeI
W^GTACW TatI
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Updated October 22, 2002 12:44